• M. Munoz-Basagoiti, O. Rivoire. Z. Zeravcic. Catalysis from the bottom-up. arXiv:2211.12107.
  • I. Boulas, S. Rimsky, O. Espeli, I. Junier, O. Rivoire. Assessing in vivo the impact of gene context on transcription through DNA supercoiling. bioRxiv:2022.10.31.514473.
  • E. Rouviere, R. Ranganathan, O. Rivoire. On the emergence of single versus multi-state allostery. arXiv:2111.09377.
  • Y. Kleeorin, W. P. Russ, O. Rivoire, R. Ranganathan. Undersampling and the inference of coevolution in proteins. bioRxiv:2021.04.22.441025 (in press at Cell Systems).


  • A. S. Zadorin, O. Rivoire (2021). Sex as information processing: optimality and evolution. Phys. Rev. E 103 : 062413.
  • S. Schulz, S. Boyer, M. Smerlak, S. Cocco, R. Monasson, C. Nizak, O. Rivoire (2021). Parameters and determinants of responses to selection in antibody libraries. PLoS Comp Biol 17 : e1008751.
  • O. Rivoire (2020). Geometry and flexibility of optimal catalysts in a minimal elastic model. J. Phys. Chem. B 124 : 807-813. [SI]
  • O. Rivoire (2019). Parsimonious evolutionary scenario for the origin of allostery and coevolution patterns in proteins. Phys. Rev. E 100 : 032411.
  • A. F. Schober, A. D. Mathis, C. Ingle, J. O. Park, L. Chen, J. D. Rabinowitz, I. Junier, O. Rivoire, K. A. Reynolds (2019). A two-enzyme adaptive unit in bacterial folate metabolism. Cell Reports 27 : 3359-3370. [SI]
  • I. Junier, P. Fremont, O. Rivoire (2018). Universal and idiosyncratic characteristic lengths in bacterial genomes. Phys. Biol. 15 : 035001. [SI]
  • A. Mayer, T. Mora, O. Rivoire, A. M. Walczak (2017). Transitions in optimal adaptive strategies for populations in fluctuating environments. Phys. Rev. E 96 : 032412.
  • A. Mayer, T. Mora, O. Rivoire, A. M. Walczak (2016). Diversity of immune strategies explained by adaptation to pathogen statistics. PNAS 113 : 8630–8635. [SI]
  • O. Rivoire, K. Reynolds, R. Ranganathan (2016). Evolution-based functional decomposition of proteins. PLoS Comput Biol 12 : e1004817. [SI]
  • I. Junier, O. Rivoire (2016). Conserved units of co-expression in bacterial genomes: an evolutionary insight. PLoS ONE 11 : e0155740. [SI]
  • S. Boyer, D. Biswas, A. K. Soshee, N. Scaramozzino, C. Nizak, O. Rivoire (2016). Hierarchy and extremes in selections from pools of randomized proteins. PNAS 113 : 3482-3487. [SI]
  • O. Rivoire (2016). Informations in models of evolutionary dynamics. J. Stat. Phys. 162 : 1324–1352.
  • M. Hemery, O. Rivoire (2015). Evolution of sparsity and modularity in a model of protein allostery. Phys. Rev. E 91 : 042704.
  • O. Rivoire, S. Leibler (2014). A model for the generation and transmission of variations in evolution. PNAS 111 : E1940-E1949. [SI]
  • O. Rivoire (2013). Elements of coevolution in biological sequences. Phys. Rev. Lett. 110 : 178102. [SI]
  • O. Rivoire, S. Leibler (2011). The value of information for populations in varying environments. J. Stat. Phys. 142 : 1124-66.
  • R. Smock, O. Rivoire, W. Russ, J. Swain, S. Leibler, R. Ranganathan, L. Gierasch (2010). An interdomain sector mediating allostery in HSP70 molecular chaperone. Mol. Syst. Biol. 6 : 414. [SI]
  • N. Halabi, O. Rivoire, S. Leibler, R. Ranganathan (2009). Protein sectors: evolutionary units of three-dimensional structures. Cell 138 : 774-86. [SI]

Olivier Rivoire's complete list of publications

Clement Nizak's complete list of publications